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If you play the DVR-MS output on the MCE machine is the metadata there?
Please do me a favor, create a small file say a 1 min. recording. Edit it in VRD, outputting to DVR-MS. Make sure it still has MCX problems. Assuming it does, upload it to our FTP site. And send an email to firstname.lastname@example.org with the name and folder of the file.
I'll check it out here and forward all the details to our DVR-MS developer so he can figure it out.